miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18138397 NC_003345.1 Halovirus HF2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12586 - 3021 90 21 -19.6 NP_542496 5' arm      3' arm
12509 + 3427 86 19 -24.1 NP_542497 5' arm      3' arm
12587 - 3572 86 19.5 -22.5 NP_542497 5' arm      3' arm
12588 - 4533 89 22 -23.3 NP_542501 5' arm      3' arm
12510 + 4581 85 19 -22.3 NP_542501 5' arm      3' arm
12590 - 6825 89 22 -27 NP_542509 5' arm      3' arm
12512 + 6917 89 22 -21.1 NP_542509 5' arm      3' arm
12592 - 8135 88 23.5 -26.7 NP_542511 5' arm      3' arm
12514 + 8955 88 20 -20.7 NP_542512 5' arm      3' arm
12593 - 9697 89 22.5 -21 NP_542513 5' arm      3' arm
12594 - 10892 89 21.5 -22.1 NP_542515 5' arm      3' arm
12515 + 10412 89 23.5 -21.1 NP_542515 5' arm      3' arm
12516 + 11368 87 20 -23.6 NP_542515 5' arm      3' arm
12517 + 11945 83 19.5 -21.5 NP_542515 5' arm      3' arm
12519 + 12742 90 21.5 -22.1 NP_542517 5' arm      3' arm
12518 + 12627 87 19 -21.2 NP_542517 5' arm      3' arm
12595 - 13466 88 21 -23 NP_542520 5' arm      3' arm
12597 - 14625 90 20 -20.6 NP_542523 5' arm      3' arm
12598 - 14748 89 20 -23.1 NP_542523 5' arm      3' arm
12521 + 14670 72 21 -24.4 NP_542523 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.