miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18138397 NC_003345.1 Halovirus HF2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12525 + 16717 86 19 -25.2 NP_542527 5' arm      3' arm
12520 + 14427 88 19 -26.5 5' arm      3' arm
12511 + 4942 90 19 -20.8 5' arm      3' arm
12514 + 8955 88 20 -20.7 NP_542512 5' arm      3' arm
12513 + 7636 89 21 -21.7 5' arm      3' arm
12512 + 6917 89 22 -21.1 NP_542509 5' arm      3' arm
12510 + 4581 85 19 -22.3 NP_542501 5' arm      3' arm
12509 + 3427 86 19 -24.1 NP_542497 5' arm      3' arm
12508 + 1269 87 19 -32.5 5' arm      3' arm
12506 + 568 89 19.5 -29.1 5' arm      3' arm
12515 + 10412 89 23.5 -21.1 NP_542515 5' arm      3' arm
12519 + 12742 90 21.5 -22.1 NP_542517 5' arm      3' arm
12526 + 16839 90 20.5 -29.7 NP_542527 5' arm      3' arm
12523 + 16343 89 21 -22.2 NP_542526 5' arm      3' arm
12522 + 14962 90 21 -28.5 NP_542524 5' arm      3' arm
12521 + 14670 72 21 -24.4 NP_542523 5' arm      3' arm
12524 + 16479 90 25 -20.31 NP_542527 5' arm      3' arm
12518 + 12627 87 19 -21.2 NP_542517 5' arm      3' arm
12517 + 11945 83 19.5 -21.5 NP_542515 5' arm      3' arm
12516 + 11368 87 20 -23.6 NP_542515 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.