miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
33099	-	691	90	19.5	-28.4			5' arm      3' arm
33042	+	12198	85	19.5	-21.1			5' arm      3' arm
33039	+	10481	89	19	-21.6	YP_355360		5' arm      3' arm
33052	+	17712	89	22	-21.5	YP_355381		5' arm      3' arm
33045	+	14771	90	21	-21	YP_355374		5' arm      3' arm
33048	+	16052	88	21	-24.3	YP_355379		5' arm      3' arm
33051	+	16957	89	21	-29.4	YP_355381		5' arm      3' arm
33047	+	15457	86	20.5	-22.3	YP_355376		5' arm      3' arm
33046	+	15063	84	20	-21.7	YP_355375		5' arm      3' arm
33040	+	10871	87	19.5	-25.7			5' arm      3' arm
33041	+	11600	85	20.5	-20.8	YP_355364		5' arm      3' arm
33043	+	13479	88	21.5	-25.8	YP_355371		5' arm      3' arm
33031	+	1846	90	21.5	-19.5	YP_355339		5' arm      3' arm
33035	+	3142	90	21	-23.1	YP_355342		5' arm      3' arm
33034	+	2679	89	20	-23.1	YP_355341		5' arm      3' arm
33033	+	2503	90	19.5	-23.2	YP_355341		5' arm      3' arm
33030	+	1736	86	19	-22	YP_355339		5' arm      3' arm
33037	+	6169	87	22	-28.9	YP_355349		5' arm      3' arm
33038	+	6887	85	19.5	-21.8	YP_355351		5' arm      3' arm
33036	+	5672	89	19	-21.2			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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