miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38639896 NC_005261.1 Bovine herpesvirus 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23566 + 14616 90 22.5 -19.4 NP_954901 5' arm      3' arm
23805 - 88637 89 21 -19.4 NP_954939 5' arm      3' arm
23825 - 105504 84 22 -19.4 5' arm      3' arm
23710 - 8211 89 19.5 -19.5 NP_954896 5' arm      3' arm
23577 + 23748 90 21 -19.5 NP_954907 5' arm      3' arm
23651 + 91422 90 19.5 -19.7 NP_954940 5' arm      3' arm
23765 - 57726 89 22.5 -19.8 NP_954920 5' arm      3' arm
23759 - 53497 90 20 -19.8 NP_954918 5' arm      3' arm
23749 - 42989 89 19 -19.8 NP_954913 5' arm      3' arm
23731 - 23642 89 20 -19.8 NP_954907 5' arm      3' arm
23754 - 47404 90 20 -19.8 NP_954917 5' arm      3' arm
23583 + 26296 89 22.5 -19.9 NP_954908 5' arm      3' arm
23683 + 117937 90 20 -20.1 NP_954956 5' arm      3' arm
23739 - 26384 89 22.5 -20.1 NP_954908 5' arm      3' arm
23808 - 90874 90 21.5 -20.2 NP_954940 5' arm      3' arm
23570 + 16086 90 22 -20.26 NP_954902 5' arm      3' arm
23576 + 23416 90 21 -20.3 NP_954907 5' arm      3' arm
23602 + 47437 90 19 -20.4 NP_954917 5' arm      3' arm
23658 + 96149 89 20 -20.4 NP_954943 5' arm      3' arm
23753 - 47288 89 20.5 -20.4 NP_954917 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.