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GenBank Identifier | RefSeq Acc. | Name |
38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
23714 | - | 9770 | 90 | 19.5 | -27.5 | NP_954897 | 5' arm 3' arm | ||
23573 | + | 21289 | 74 | 19.5 | -32.4 | NP_954905 | 5' arm 3' arm | ||
23778 | - | 69278 | 89 | 19.5 | -21.8 | NP_954927 | 5' arm 3' arm | ||
23793 | - | 81537 | 89 | 19.5 | -21.5 | NP_954931 | 5' arm 3' arm | ||
23651 | + | 91422 | 90 | 19.5 | -19.7 | NP_954940 | 5' arm 3' arm | ||
23568 | + | 15540 | 88 | 19.5 | -22.6 | NP_954902 | 5' arm 3' arm | ||
23665 | + | 100258 | 89 | 19.5 | -25.9 | NP_954947 | 5' arm 3' arm | ||
23683 | + | 117937 | 90 | 20 | -20.1 | NP_954956 | 5' arm 3' arm | ||
23781 | - | 71419 | 90 | 20 | -29.8 | NP_954929 | 5' arm 3' arm | ||
23836 | - | 117693 | 87 | 20 | -21.8 | NP_954956 | 5' arm 3' arm | ||
23657 | + | 95427 | 90 | 20 | -26 | NP_954942 | 5' arm 3' arm | ||
23666 | + | 101223 | 90 | 20 | -21.8 | NP_954949 | 5' arm 3' arm | ||
23610 | + | 53154 | 87 | 20 | -27 | NP_954918 | 5' arm 3' arm | ||
23607 | + | 51930 | 89 | 20 | -22.9 | 5' arm 3' arm | |||
23682 | + | 117175 | 89 | 20 | -20.8 | NP_954955 | 5' arm 3' arm | ||
23776 | - | 68426 | 86 | 20 | -23.6 | 5' arm 3' arm | |||
23603 | + | 47962 | 90 | 20 | -22.7 | NP_954917 | 5' arm 3' arm | ||
23846 | - | 123579 | 89 | 20 | -27 | NP_954960 | 5' arm 3' arm | ||
23797 | - | 82659 | 87 | 20 | -28.5 | NP_954934 | 5' arm 3' arm | ||
23785 | - | 74080 | 89 | 20 | -24.4 | NP_954929 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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