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| GenBank Identifier | RefSeq Acc. | Name |
| 38639896 | NC_005261.1 | Bovine herpesvirus 5 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 23806 | - | 88994 | 90 | 19.5 | -21.2 | NP_954939 | 5' arm 3' arm | ||
| 23839 | - | 119108 | 90 | 19.5 | -24.11 | NP_954957 | 5' arm 3' arm | ||
| 23793 | - | 81537 | 89 | 19.5 | -21.5 | NP_954931 | 5' arm 3' arm | ||
| 23778 | - | 69278 | 89 | 19.5 | -21.8 | NP_954927 | 5' arm 3' arm | ||
| 23573 | + | 21289 | 74 | 19.5 | -32.4 | NP_954905 | 5' arm 3' arm | ||
| 23714 | - | 9770 | 90 | 19.5 | -27.5 | NP_954897 | 5' arm 3' arm | ||
| 23575 | + | 22987 | 90 | 19.5 | -22.8 | NP_954906 | 5' arm 3' arm | ||
| 23657 | + | 95427 | 90 | 20 | -26 | NP_954942 | 5' arm 3' arm | ||
| 23785 | - | 74080 | 89 | 20 | -24.4 | NP_954929 | 5' arm 3' arm | ||
| 23666 | + | 101223 | 90 | 20 | -21.8 | NP_954949 | 5' arm 3' arm | ||
| 23846 | - | 123579 | 89 | 20 | -27 | NP_954960 | 5' arm 3' arm | ||
| 23797 | - | 82659 | 87 | 20 | -28.5 | NP_954934 | 5' arm 3' arm | ||
| 23776 | - | 68426 | 86 | 20 | -23.6 | 5' arm 3' arm | |||
| 23607 | + | 51930 | 89 | 20 | -22.9 | 5' arm 3' arm | |||
| 23610 | + | 53154 | 87 | 20 | -27 | NP_954918 | 5' arm 3' arm | ||
| 23781 | - | 71419 | 90 | 20 | -29.8 | NP_954929 | 5' arm 3' arm | ||
| 23682 | + | 117175 | 89 | 20 | -20.8 | NP_954955 | 5' arm 3' arm | ||
| 23683 | + | 117937 | 90 | 20 | -20.1 | NP_954956 | 5' arm 3' arm | ||
| 23603 | + | 47962 | 90 | 20 | -22.7 | NP_954917 | 5' arm 3' arm | ||
| 23836 | - | 117693 | 87 | 20 | -21.8 | NP_954956 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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