miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
38639896 NC_005261.1 Bovine herpesvirus 5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
23714 - 9770 90 19.5 -27.5 NP_954897 5' arm      3' arm
23573 + 21289 74 19.5 -32.4 NP_954905 5' arm      3' arm
23778 - 69278 89 19.5 -21.8 NP_954927 5' arm      3' arm
23793 - 81537 89 19.5 -21.5 NP_954931 5' arm      3' arm
23651 + 91422 90 19.5 -19.7 NP_954940 5' arm      3' arm
23568 + 15540 88 19.5 -22.6 NP_954902 5' arm      3' arm
23665 + 100258 89 19.5 -25.9 NP_954947 5' arm      3' arm
23683 + 117937 90 20 -20.1 NP_954956 5' arm      3' arm
23781 - 71419 90 20 -29.8 NP_954929 5' arm      3' arm
23836 - 117693 87 20 -21.8 NP_954956 5' arm      3' arm
23657 + 95427 90 20 -26 NP_954942 5' arm      3' arm
23666 + 101223 90 20 -21.8 NP_954949 5' arm      3' arm
23610 + 53154 87 20 -27 NP_954918 5' arm      3' arm
23607 + 51930 89 20 -22.9 5' arm      3' arm
23682 + 117175 89 20 -20.8 NP_954955 5' arm      3' arm
23776 - 68426 86 20 -23.6 5' arm      3' arm
23603 + 47962 90 20 -22.7 NP_954917 5' arm      3' arm
23846 - 123579 89 20 -27 NP_954960 5' arm      3' arm
23797 - 82659 87 20 -28.5 NP_954934 5' arm      3' arm
23785 - 74080 89 20 -24.4 NP_954929 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.