miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10834856 NC_002577.1 Gallid herpesvirus 3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9606 + 33298 90 21 -22.4 NP_066842 5' arm      3' arm
9601 + 11138 90 24 -21.3 5' arm      3' arm
9599 + 10604 88 23 -29.7 NP_066826 5' arm      3' arm
9600 + 10959 88 20.5 -28.4 5' arm      3' arm
9598 + 10182 87 20 -23.4 NP_066826 5' arm      3' arm
9602 + 15549 90 21.5 -19.8 NP_066829 5' arm      3' arm
9604 + 20996 88 24.5 -35.7 NP_066835 5' arm      3' arm
9603 + 19100 90 19.5 -21.8 NP_066833 5' arm      3' arm
9605 + 24740 89 22.5 -20.2 NP_066836 5' arm      3' arm
9597 + 9769 90 27 -26.4 NP_066825 5' arm      3' arm
9596 + 8801 86 20 -21.9 NP_066824 5' arm      3' arm
9595 + 8500 90 23 -21.1 NP_066823 5' arm      3' arm
9587 + 2851 90 24.5 -36.5 NP_066819 5' arm      3' arm
9588 + 3140 89 23 -23.7 NP_066819 5' arm      3' arm
9589 + 4507 86 21 -28.1 5' arm      3' arm
9590 + 4641 90 19.5 -22.66 5' arm      3' arm
9594 + 8409 90 26 -24.1 NP_066896 5' arm      3' arm
9591 + 5111 89 24.5 -30.4 NP_066821 5' arm      3' arm
9593 + 6629 90 24 -22.5 NP_066897 5' arm      3' arm
9592 + 5495 90 23 -29.7 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.