miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10140926 NC_002531.1 Alcelaphine herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9434 + 49360 87 19 -21.7 NP_065524 5' arm      3' arm
9457 + 122364 90 19 -26.2 NP_065571 5' arm      3' arm
9498 - 77971 82 19 -21.1 NP_065550 5' arm      3' arm
9429 + 36024 90 19 -24.8 NP_065517 5' arm      3' arm
9500 - 78327 87 19 -22.8 NP_065550 5' arm      3' arm
9513 - 122605 87 19 -26.9 NP_065571 5' arm      3' arm
9455 + 121838 79 19 -26.4 NP_065571 5' arm      3' arm
9497 - 70590 88 19 -22.4 NP_065544 5' arm      3' arm
9459 + 123092 90 19 -23.9 NP_065571 5' arm      3' arm
9437 + 57995 89 19 -26.6 NP_065533 5' arm      3' arm
9463 + 130003 82 19 -22.1 NP_065573 5' arm      3' arm
9448 + 104456 90 19.5 -20.2 NP_065565 5' arm      3' arm
9417 + 18538 86 19.5 -21.1 NP_065511 5' arm      3' arm
9421 + 29854 88 19.5 -29.4 5' arm      3' arm
9489 - 57225 90 19.5 -23.3 NP_065532 5' arm      3' arm
9456 + 122057 90 20 -20.1 NP_065571 5' arm      3' arm
9444 + 91045 88 20 -29.8 NP_065560 5' arm      3' arm
9443 + 88742 90 20 -22.9 NP_065559 5' arm      3' arm
9446 + 96096 90 20 -23.1 NP_065563 5' arm      3' arm
9415 + 6996 89 20 -23.5 NP_065508 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.