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GenBank Identifier | RefSeq Acc. | Name |
39163630 | NC_005286.1 | Pelargonium flower break virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
24980 | + | 32 | 89 | 23 | -24.3 | NP_945122 | 5' arm 3' arm | ||
24981 | + | 458 | 90 | 20.5 | -28.4 | NP_945122 | 5' arm 3' arm | ||
24982 | + | 764 | 87 | 20.5 | -30.7 | NP_945122 | 5' arm 3' arm | ||
24983 | + | 1119 | 80 | 21 | -19.5 | NP_945123 | 5' arm 3' arm | ||
24984 | + | 1724 | 88 | 21 | -19.5 | NP_945123 | 5' arm 3' arm | ||
24985 | + | 3668 | 90 | 19 | -22.3 | 5' arm 3' arm | |||
24986 | - | 2846 | 89 | 19 | -21.4 | NP_945127 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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