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GenBank Identifier | RefSeq Acc. | Name |
48477070 | NC_003992.2 | Foot-and-mouth disease virus SAT 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
15496 | + | 904 | 90 | 21.5 | -24.4 | 5' arm 3' arm | |||
15497 | + | 2231 | 88 | 22 | -25.3 | YP_024314 | 5' arm 3' arm | ||
15498 | + | 4136 | 90 | 20.5 | -26.3 | YP_024314 | 5' arm 3' arm | ||
15499 | - | 2933 | 90 | 21 | -22.1 | YP_024314 | 5' arm 3' arm | ||
15500 | - | 3132 | 88 | 20.5 | -23.3 | YP_024314 | 5' arm 3' arm | ||
15501 | - | 3428 | 89 | 20.5 | -21.9 | YP_024314 | 5' arm 3' arm | ||
15502 | - | 3748 | 82 | 20 | -28.3 | YP_024314 | 5' arm 3' arm | ||
15503 | - | 3874 | 90 | 22.5 | -23.8 | YP_024314 | 5' arm 3' arm | ||
15504 | - | 4046 | 85 | 20 | -20 | YP_024314 | 5' arm 3' arm | ||
15505 | - | 4298 | 88 | 19 | -24.9 | YP_024314 | 5' arm 3' arm | ||
15506 | - | 4963 | 82 | 20.5 | -22.4 | YP_024314 | 5' arm 3' arm | ||
15507 | - | 5548 | 89 | 19.5 | -19.8 | YP_024314 | 5' arm 3' arm | ||
15508 | - | 6767 | 89 | 24 | -22.5 | YP_024314 | 5' arm 3' arm | ||
15509 | - | 7208 | 88 | 21 | -21.4 | YP_024314 | 5' arm 3' arm | ||
15510 | - | 7961 | 88 | 20 | -23.6 | YP_024314 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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