miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
19550999 NC_003448.1 Striped Jack nervous necrosis virus RNA1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13590 + 171 86 21.5 -24.5 NP_599247 5' arm      3' arm
13591 + 2483 88 26 -22 NP_599247 5' arm      3' arm
13592 + 2909 87 20.5 -25.1 NP_599247 5' arm      3' arm
13593 - 1259 88 20 -27.6 NP_599247 5' arm      3' arm
13594 - 1603 89 21.5 -26.4 NP_599247 5' arm      3' arm
13595 - 2845 86 23.5 -29.8 NP_599248 5' arm      3' arm
13596 - 2996 89 23 -25.8 NP_599248 5' arm      3' arm
13597 + 1215 84 20.5 -21.4 5' arm      3' arm
13598 - 313 90 24.5 -23.4 NP_599249 5' arm      3' arm
13599 - 495 89 23 -30.9 NP_599249 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.