miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
17313217 NC_003278.1 Bacteriophage phi CTX

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12034 - 34686 89 20.5 -20.8 NP_490644 5' arm      3' arm
12033 - 33932 90 22 -25.4 NP_490644 5' arm      3' arm
12032 - 33536 89 20.5 -26.7 NP_490642 5' arm      3' arm
12031 - 33139 89 21 -25.9 NP_490641 5' arm      3' arm
12030 - 32905 90 22.5 -22 NP_490641 5' arm      3' arm
12029 - 32238 87 19 -26.1 NP_490641 5' arm      3' arm
12028 - 31906 90 22 -32.5 NP_490641 5' arm      3' arm
12027 - 31766 89 19.5 -21.1 NP_490641 5' arm      3' arm
12026 - 31440 83 24 -20 NP_490640 5' arm      3' arm
12025 - 31248 89 23.5 -23.6 NP_490639 5' arm      3' arm
12024 - 30670 89 23 -20.8 NP_490637 5' arm      3' arm
12023 - 30457 88 23 -23.4 NP_490637 5' arm      3' arm
12022 - 30171 89 20 -21.5 NP_490637 5' arm      3' arm
12021 - 29873 88 21.5 -28 NP_490637 5' arm      3' arm
12020 - 28843 90 23 -23.9 NP_490637 5' arm      3' arm
12019 - 28330 90 19 -25.5 NP_490637 5' arm      3' arm
12018 - 27979 87 22.5 -26.9 NP_490636 5' arm      3' arm
12017 - 27557 89 20 -29.3 NP_490635 5' arm      3' arm
12016 - 26988 89 22 -21.2 NP_490633 5' arm      3' arm
12015 - 25728 89 21 -19.9 NP_490631 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.