miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
10314005 NC_002551.1 Vesicular exanthema of swine virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9545 + 63 88 21.5 -28.2 NP_066255 5' arm      3' arm
9546 + 1715 90 19 -19.7 NP_066255 5' arm      3' arm
9547 + 2970 88 21 -27.9 NP_066255 5' arm      3' arm
9548 + 3889 90 22.5 -21.9 NP_066255 5' arm      3' arm
9549 + 6060 88 20 -20.1 NP_066256 5' arm      3' arm
9550 + 6407 88 20 -24.3 NP_066256 5' arm      3' arm
9551 - 148 83 21.5 -25.7 NP_066255 5' arm      3' arm
9552 - 536 90 20.5 -19.7 NP_066255 5' arm      3' arm
9553 - 1811 89 21 -20.2 NP_066255 5' arm      3' arm
9554 - 3375 86 21 -27 NP_066255 5' arm      3' arm
9555 - 4636 89 21.5 -19.8 NP_066255 5' arm      3' arm
9556 - 6014 88 21.5 -26.6 NP_066256 5' arm      3' arm
9557 - 6259 88 21.5 -20.1 NP_066256 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.