miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
12084824 NC_002641.1 Meleagrid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
9919 - 787 90 22.5 -24.2 NP_073287 5' arm      3' arm
9878 + 99114 90 24 -35.3 NP_073341 5' arm      3' arm
9879 + 103871 84 21 -21 NP_073346 5' arm      3' arm
9880 + 109319 89 21 -28.94 NP_073349 5' arm      3' arm
9883 + 118958 88 26 -30.6 5' arm      3' arm
9881 + 117738 89 24.5 -27.1 5' arm      3' arm
9887 + 121391 89 24.5 -24.6 5' arm      3' arm
9889 + 121856 87 23.5 -26.6 5' arm      3' arm
9886 + 121222 90 23 -19.7 5' arm      3' arm
9877 + 77789 89 24 -20.9 NP_073330 5' arm      3' arm
9876 + 60484 90 20 -20.6 NP_073323 5' arm      3' arm
9875 + 38479 90 21 -22.5 NP_073312 5' arm      3' arm
9866 + 1237 86 20.5 -26.2 5' arm      3' arm
9867 + 2210 86 20.5 -19.7 5' arm      3' arm
9870 + 5696 88 21.5 -28.1 5' arm      3' arm
9871 + 7402 90 21.5 -21.5 NP_073291 5' arm      3' arm
9869 + 5131 89 19 -19.7 NP_073290 5' arm      3' arm
9872 + 13589 85 26.5 -36.4 NP_073297 5' arm      3' arm
9873 + 24689 90 21 -22.6 NP_073302 5' arm      3' arm
9874 + 36828 90 22 -27.3 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.