miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
13453	-	117765	86	29.5	-31.6		kshv-mir-K12-12	5' arm
13342	+	121403	89	29.5	-26.2			5' arm      3' arm
13280	+	23974	89	27.5	-26.9			5' arm      3' arm
13310	+	59091	90	26.5	-27.6	NP_572092		5' arm      3' arm
13428	-	104859	89	25.5	-24.2	NP_572120		5' arm      3' arm
13307	+	54273	83	25.5	-27	NP_572086		5' arm      3' arm
13456	-	120434	89	25	-19.4		kshv-mir-K12-7	3' arm
13279	+	23628	81	25	-36.6			5' arm      3' arm
13290	+	34033	87	25	-22	NP_572071		5' arm      3' arm
13387	-	47195	89	24.5	-22.2	NP_572078		5' arm      3' arm
13459	-	121489	84	24.5	-22.7		kshv-mir-K12-4	5' arm      3' arm
13458	-	121341	88	24.5	-20.9		kshv-mir-K12-5	3' arm
13343	+	121536	87	24	-25.2			5' arm      3' arm
13306	+	53247	87	24	-23.7	NP_572085		5' arm      3' arm
13344	+	122146	85	24	-21.9	NP_572127		5' arm      3' arm
13411	-	88053	90	24	-29.7	NP_572112		5' arm      3' arm
13333	+	107946	90	24	-24.9	NP_572120		5' arm      3' arm
13401	-	76556	89	24	-26.4			5' arm      3' arm
13284	+	31202	90	24	-21.4	NP_572069		5' arm      3' arm
13329	+	95613	90	24	-24.7	NP_572115		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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