miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18845965 NC_003409.1 Human herpesvirus 8

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13457 - 120834 89 20.5 -29.1 kshv-mir-K12-6 5' arm      3' arm
13455 - 118955 89 22 -23.8 5' arm      3' arm
13374 - 23433 89 19.5 -27.9 5' arm      3' arm
13372 - 22248 87 20 -26.9 5' arm      3' arm
13375 - 24309 86 20 -20.7 5' arm      3' arm
13278 + 22201 86 19 -23.9 5' arm      3' arm
13280 + 23974 89 27.5 -26.9 5' arm      3' arm
13279 + 23628 81 25 -36.6 5' arm      3' arm
13377 - 26860 86 20.5 -19.9 5' arm      3' arm
13395 - 62056 90 22.5 -24.19 5' arm      3' arm
13384 - 42850 89 20.5 -25 5' arm      3' arm
13410 - 85343 87 20 -28.1 5' arm      3' arm
13415 - 91752 86 21 -25.5 5' arm      3' arm
13401 - 76556 89 24 -26.4 5' arm      3' arm
13414 - 90726 89 21.5 -21.7 5' arm      3' arm
13373 - 22527 90 21.5 -23 5' arm      3' arm
13412 - 90396 79 19.5 -22.7 5' arm      3' arm
13413 - 90513 87 20.5 -20.7 5' arm      3' arm
13281 + 29923 87 21 -20 5' arm      3' arm
13359 - 4231 89 20.5 -22.8 NP_572054 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.