miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18845965 NC_003409.1 Human herpesvirus 8

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13423 - 101167 87 19 -26.34 NP_572118 5' arm      3' arm
13308 + 54619 88 19 -21.2 NP_572086 5' arm      3' arm
13443 - 112182 90 19 -20.7 NP_572121 5' arm      3' arm
13321 + 78856 89 19.5 -21.6 NP_572108 5' arm      3' arm
13392 - 52305 82 19.5 -20.1 NP_572084 5' arm      3' arm
13314 + 66436 86 19.5 -21.9 NP_572097 5' arm      3' arm
13309 + 57765 85 19.5 -31.4 NP_572090 5' arm      3' arm
13299 + 47792 88 19.5 -21.9 NP_572078 5' arm      3' arm
13328 + 89886 77 19.5 -19.7 5' arm      3' arm
13275 + 13853 88 19.5 -20.4 NP_572057 5' arm      3' arm
13462 - 123783 82 19.5 -30.6 5' arm      3' arm
13422 - 99653 84 19.5 -21.9 NP_572117 5' arm      3' arm
13398 - 71284 90 19.5 -21.8 NP_572101 5' arm      3' arm
13340 + 119582 89 19.5 -27.9 5' arm      3' arm
13288 + 33239 90 19.5 -21 NP_572071 5' arm      3' arm
13405 - 81496 89 19.5 -22 NP_572109 5' arm      3' arm
13391 - 50118 90 19.5 -22.4 NP_572081 5' arm      3' arm
13397 - 68437 89 19.5 -21.1 NP_572098 5' arm      3' arm
13296 + 41647 89 19.5 -28 NP_572076 5' arm      3' arm
13404 - 79376 85 19.5 -19.9 NP_572108 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.