miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18845965 NC_003409.1 Human herpesvirus 8

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13353 + 132342 85 19 -21.2 NP_572132 5' arm      3' arm
13354 + 132813 90 22 -28.4 NP_572132 5' arm      3' arm
13355 + 133107 84 21 -24.3 NP_572132 5' arm      3' arm
13356 + 133539 81 21.5 -27.7 NP_572132 5' arm      3' arm
13357 + 133795 90 19 -28.3 NP_572132 5' arm      3' arm
13358 + 134778 89 23.5 -25.2 5' arm      3' arm
13359 - 4231 89 20.5 -22.8 NP_572054 5' arm      3' arm
13360 - 10084 89 21.5 -19.7 NP_572056 5' arm      3' arm
13361 - 11699 89 22.5 -21.7 NP_572057 5' arm      3' arm
13362 - 11820 81 20.5 -20.3 NP_572057 5' arm      3' arm
13363 - 12967 90 20.5 -21.5 NP_572057 5' arm      3' arm
13364 - 14105 87 23.5 -22.5 NP_572057 5' arm      3' arm
13365 - 14797 86 19 -30.4 NP_572058 5' arm      3' arm
13366 - 15058 86 22.5 -21.9 NP_572058 5' arm      3' arm
13367 - 15917 90 19 -28.5 NP_572059 5' arm      3' arm
13368 - 16778 90 21.5 -21.4 NP_572059 5' arm      3' arm
13369 - 18223 86 21.5 -22.8 NP_572061 5' arm      3' arm
13370 - 20697 87 19 -20.9 NP_572063 5' arm      3' arm
13371 - 20998 89 21 -22.8 NP_572063 5' arm      3' arm
13372 - 22248 87 20 -26.9 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.