miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
13242472 NC_002687.1 Ectocarpus siliculosus virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
10597 - 333263 87 19.5 -24.4 NP_077716 5' arm      3' arm
10596 - 332311 89 20.5 -22.1 5' arm      3' arm
10595 - 332203 90 19.5 -22.3 5' arm      3' arm
10594 - 331886 89 21 -24 5' arm      3' arm
10593 - 331421 86 24 -25.4 5' arm      3' arm
10592 - 325545 90 20.5 -24.8 5' arm      3' arm
10591 - 325394 90 25.5 -35.1 5' arm      3' arm
10590 - 325157 87 19.5 -31.2 5' arm      3' arm
10589 - 325010 90 25.5 -35.1 5' arm      3' arm
10588 - 324773 87 19.5 -31.2 5' arm      3' arm
10587 - 324626 90 25.5 -35.1 5' arm      3' arm
10586 - 324389 87 19.5 -31.2 5' arm      3' arm
10585 - 324242 90 24 -29.3 5' arm      3' arm
10584 - 324005 87 19.5 -31.2 5' arm      3' arm
10583 - 319910 90 21 -20.3 NP_077663 5' arm      3' arm
10582 - 319090 89 21.5 -24.1 NP_077663 5' arm      3' arm
10581 - 318958 80 19.5 -26.3 NP_077663 5' arm      3' arm
10580 - 316276 88 21.5 -22.7 NP_597950 5' arm      3' arm
10579 - 313266 88 21.5 -27.3 NP_077701 5' arm      3' arm
10578 - 312133 89 25.5 -21.1 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.