miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
13242472 NC_002687.1 Ectocarpus siliculosus virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
10303 + 53596 90 25 -22.59 5' arm      3' arm
10386 + 229502 81 21 -21.4 5' arm      3' arm
10409 + 283421 86 21.5 -26.1 5' arm      3' arm
10359 + 200183 90 22 -22.56 5' arm      3' arm
10362 + 201207 90 22.5 -22.3 5' arm      3' arm
10341 + 144391 87 20.5 -26.6 5' arm      3' arm
10358 + 199939 87 24 -30.2 5' arm      3' arm
10343 + 146767 90 21 -26.5 5' arm      3' arm
10302 + 45826 88 19.5 -19.4 5' arm      3' arm
10294 + 22334 89 26 -32.1 5' arm      3' arm
10419 + 300396 90 19.5 -20.2 5' arm      3' arm
10291 + 14397 90 21 -21.9 5' arm      3' arm
10426 + 309643 89 19 -21.6 5' arm      3' arm
10424 + 307787 90 20 -21.9 5' arm      3' arm
10425 + 308631 87 20 -33 5' arm      3' arm
10423 + 304215 90 25 -23.6 5' arm      3' arm
10290 + 12153 86 21 -25.1 5' arm      3' arm
10304 + 53790 90 25 -22.59 5' arm      3' arm
10342 + 146659 85 22 -23.8 5' arm      3' arm
10410 + 291596 89 22.5 -28.8 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.