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GenBank Identifier | RefSeq Acc. | Name |
13242472 | NC_002687.1 | Ectocarpus siliculosus virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
10450 | - | 22424 | 90 | 24 | -36 | 5' arm 3' arm | |||
10587 | - | 324626 | 90 | 25.5 | -35.1 | 5' arm 3' arm | |||
10591 | - | 325394 | 90 | 25.5 | -35.1 | 5' arm 3' arm | |||
10589 | - | 325010 | 90 | 25.5 | -35.1 | 5' arm 3' arm | |||
10353 | + | 181773 | 90 | 19 | -34.4 | NP_077636 | 5' arm 3' arm | ||
10478 | - | 83511 | 89 | 21.5 | -33.6 | NP_077541 | 5' arm 3' arm | ||
10491 | - | 103199 | 90 | 27 | -33.5 | NP_077559 | 5' arm 3' arm | ||
10425 | + | 308631 | 87 | 20 | -33 | 5' arm 3' arm | |||
10320 | + | 85501 | 90 | 24 | -32.9 | NP_077542 | 5' arm 3' arm | ||
10317 | + | 83424 | 90 | 20.5 | -32.9 | NP_077541 | 5' arm 3' arm | ||
10461 | - | 42082 | 88 | 19 | -32.7 | NP_077507 | 5' arm 3' arm | ||
10469 | - | 65491 | 89 | 19 | -32.5 | NP_077519 | 5' arm 3' arm | ||
10294 | + | 22334 | 89 | 26 | -32.1 | 5' arm 3' arm | |||
10468 | - | 64699 | 86 | 20.5 | -31.4 | NP_077517 | 5' arm 3' arm | ||
10588 | - | 324773 | 87 | 19.5 | -31.2 | 5' arm 3' arm | |||
10586 | - | 324389 | 87 | 19.5 | -31.2 | 5' arm 3' arm | |||
10584 | - | 324005 | 87 | 19.5 | -31.2 | 5' arm 3' arm | |||
10590 | - | 325157 | 87 | 19.5 | -31.2 | 5' arm 3' arm | |||
10539 | - | 217721 | 85 | 20.5 | -31 | NP_077654 | 5' arm 3' arm | ||
10301 | + | 42880 | 90 | 23 | -30.8 | NP_077508 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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