miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
13242472 NC_002687.1 Ectocarpus siliculosus virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
10450 - 22424 90 24 -36 5' arm      3' arm
10587 - 324626 90 25.5 -35.1 5' arm      3' arm
10591 - 325394 90 25.5 -35.1 5' arm      3' arm
10589 - 325010 90 25.5 -35.1 5' arm      3' arm
10353 + 181773 90 19 -34.4 NP_077636 5' arm      3' arm
10478 - 83511 89 21.5 -33.6 NP_077541 5' arm      3' arm
10491 - 103199 90 27 -33.5 NP_077559 5' arm      3' arm
10425 + 308631 87 20 -33 5' arm      3' arm
10320 + 85501 90 24 -32.9 NP_077542 5' arm      3' arm
10317 + 83424 90 20.5 -32.9 NP_077541 5' arm      3' arm
10461 - 42082 88 19 -32.7 NP_077507 5' arm      3' arm
10469 - 65491 89 19 -32.5 NP_077519 5' arm      3' arm
10294 + 22334 89 26 -32.1 5' arm      3' arm
10468 - 64699 86 20.5 -31.4 NP_077517 5' arm      3' arm
10588 - 324773 87 19.5 -31.2 5' arm      3' arm
10586 - 324389 87 19.5 -31.2 5' arm      3' arm
10584 - 324005 87 19.5 -31.2 5' arm      3' arm
10590 - 325157 87 19.5 -31.2 5' arm      3' arm
10539 - 217721 85 20.5 -31 NP_077654 5' arm      3' arm
10301 + 42880 90 23 -30.8 NP_077508 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.