miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
13242472 NC_002687.1 Ectocarpus siliculosus virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
10437 - 3141 90 19.5 -21.8 NP_077486 5' arm      3' arm
10296 + 25590 88 20.5 -22.1 NP_077497 5' arm      3' arm
10295 + 25439 89 19 -20.3 NP_077497 5' arm      3' arm
10297 + 32699 90 23 -27 NP_077502 5' arm      3' arm
10298 + 39968 87 19.5 -22 NP_077506 5' arm      3' arm
10299 + 40346 80 19.5 -26.3 NP_077663 5' arm      3' arm
10300 + 41373 89 23 -24.8 NP_077507 5' arm      3' arm
10301 + 42880 90 23 -30.8 NP_077508 5' arm      3' arm
10302 + 45826 88 19.5 -19.4 5' arm      3' arm
10294 + 22334 89 26 -32.1 5' arm      3' arm
10292 + 17825 90 19 -19.5 NP_077492 5' arm      3' arm
10291 + 14397 90 21 -21.9 5' arm      3' arm
10283 + 2323 88 20 -20.9 NP_077486 5' arm      3' arm
10286 + 3930 89 20 -24.1 NP_077487 5' arm      3' arm
10285 + 3208 87 19 -20.2 NP_077486 5' arm      3' arm
10287 + 5514 90 20.5 -24 NP_077488 5' arm      3' arm
10290 + 12153 86 21 -25.1 5' arm      3' arm
10288 + 9980 89 19 -23.6 NP_597942 5' arm      3' arm
10289 + 10576 89 19 -20.4 NP_597942 5' arm      3' arm
10293 + 18343 83 23.5 -20.6 NP_077492 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.