miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628107 NC_001658.1 Cassava common mosaic virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
4097 - 2982 90 20.5 -23 NP_042695 5' arm      3' arm
4098 - 4761 89 20 -20.8 NP_042696 5' arm      3' arm
4099 - 4864 87 24 -23.8 NP_042696 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.