miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629718 NC_001837.1 Hepatitis GB virus A

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6172 + 3161 90 20 -19.4 NP_045010 5' arm      3' arm
6164 + 1285 90 23 -20 NP_045010 5' arm      3' arm
6167 + 1832 90 19.5 -20.1 NP_045010 5' arm      3' arm
6177 + 5112 89 21 -20.2 NP_045010 5' arm      3' arm
6160 + 28 88 19.5 -20.3 5' arm      3' arm
6180 + 6091 87 20.5 -21.2 NP_045010 5' arm      3' arm
6165 + 1391 86 19 -21.3 NP_045010 5' arm      3' arm
6186 + 8363 87 20 -21.6 NP_045010 5' arm      3' arm
6173 + 3849 88 19.5 -21.9 NP_045010 5' arm      3' arm
6161 + 141 89 21.5 -22 5' arm      3' arm
6193 - 6412 89 20.5 -22.4 NP_045010 5' arm      3' arm
6162 + 320 87 20 -22.5 5' arm      3' arm
6188 + 8826 84 23.5 -22.6 NP_045010 5' arm      3' arm
6176 + 4825 89 21.5 -23.4 NP_045010 5' arm      3' arm
6174 + 4280 90 23 -24.6 NP_045010 5' arm      3' arm
6181 + 6711 88 21.5 -25.2 NP_045010 5' arm      3' arm
6187 + 8487 90 22.5 -25.8 NP_045010 5' arm      3' arm
6192 - 5701 88 21.5 -26 NP_045010 5' arm      3' arm
6175 + 4512 90 20 -26.5 NP_045010 5' arm      3' arm
6163 + 487 90 21 -26.6 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.