miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
57659767 NC_006662.1 Cotesia congregata virus segment Circle36

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31530 - 10865 85 22.5 -28.5 5' arm      3' arm
31529 - 8811 89 27 -27.5 5' arm      3' arm
31528 - 6157 89 24 -32.5 5' arm      3' arm
31527 - 5011 85 21 -29.9 5' arm      3' arm
31526 - 3768 90 24.5 -20.62 5' arm      3' arm
31525 + 10780 87 26 -24.7 5' arm      3' arm
31524 + 6068 90 26.5 -32.4 5' arm      3' arm
31523 - 11136 88 28 -31.1 5' arm      3' arm
31522 - 11036 90 22.5 -25 5' arm      3' arm
31521 - 6814 89 25.5 -23.9 5' arm      3' arm
31520 + 10946 88 20.5 -28.1 5' arm      3' arm
31519 + 6728 86 27 -29.2 5' arm      3' arm
31518 + 5190 87 24.5 -24.3 5' arm      3' arm
31517 - 10672 90 23.5 -24.5 5' arm      3' arm
31516 - 9482 89 22.5 -19.9 5' arm      3' arm
31515 - 6439 89 20.5 -26 5' arm      3' arm
31514 - 3419 88 27.5 -21 YP_184900 5' arm      3' arm
31513 + 14621 90 21 -20.9 5' arm      3' arm
31512 + 10560 81 25 -30.4 5' arm      3' arm
31511 - 15431 82 21 -32.7 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.