miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
31402	+	9301	90	22.5	-25.1			5' arm      3' arm
31428	+	13190	90	28	-20.3			5' arm      3' arm
31427	+	12337	86	22.5	-21.4			5' arm      3' arm
31429	+	14448	76	26	-30.6			5' arm      3' arm
31456	+	846	86	24	-29.6			5' arm      3' arm
31431	+	22700	90	19.5	-19.8			5' arm      3' arm
31450	+	965	90	30.5	-31.5			5' arm      3' arm
31451	+	1266	90	24.5	-23.84			5' arm      3' arm
31452	+	12959	90	19	-22.4			5' arm      3' arm
31457	+	5368	79	26.5	-32.5			5' arm      3' arm
31416	+	26831	88	21.5	-31.3			5' arm      3' arm
31415	+	26664	88	28.5	-34			5' arm      3' arm
31403	+	12314	90	22.5	-25.1			5' arm      3' arm
31404	+	15568	89	33	-25.4			5' arm      3' arm
31405	+	25453	86	21.5	-25.6			5' arm      3' arm
31409	+	12942	89	25	-27.6			5' arm      3' arm
31411	+	6028	89	29	-32.5			5' arm      3' arm
31414	+	6668	90	24.5	-25.5			5' arm      3' arm
31527	-	5011	85	21	-29.9			5' arm      3' arm
31458	+	31612	87	35	-30.3			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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