miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20522134 NC_003808.1 Spinach latent virus RNA 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15224 + 664 89 21 -22.1 NP_620677 5' arm      3' arm
15225 + 3181 90 20 -25.1 NP_620677 5' arm      3' arm
15226 + 2293 87 19 -21.3 NP_620678 5' arm      3' arm
15227 - 2379 87 22 -25.7 NP_620679 5' arm      3' arm
15228 + 1880 86 21 -25.2 NP_620681 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.