miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
20153373 NC_003607.1 Helminthosporium victoriae virus 190S

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
14833 - 4087 89 20 -22.5 NP_619670 5' arm      3' arm
14832 - 3974 90 20 -21.4 NP_619670 5' arm      3' arm
14831 - 3712 89 20 -20.3 NP_619670 5' arm      3' arm
14830 - 3333 86 22 -27.3 NP_619670 5' arm      3' arm
14829 - 2369 90 21.5 -24.2 NP_619669 5' arm      3' arm
14828 - 2091 90 22.5 -21.8 NP_619669 5' arm      3' arm
14827 - 1346 82 19 -23.6 NP_619669 5' arm      3' arm
14826 + 4252 90 21.5 -20 NP_619670 5' arm      3' arm
14825 + 3435 86 24 -29.4 NP_619670 5' arm      3' arm
14824 + 3246 87 21.5 -28.9 NP_619670 5' arm      3' arm
14823 + 3132 89 22.5 -22.4 NP_619670 5' arm      3' arm
14822 + 1168 90 19 -23.4 NP_619669 5' arm      3' arm
14821 + 1064 89 22.5 -24 NP_619669 5' arm      3' arm
14820 + 626 90 21.5 -28.7 NP_619669 5' arm      3' arm
14819 + 170 89 25.5 -35.8 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.