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GenBank Identifier | RefSeq Acc. | Name |
51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
28870 | + | 134290 | 89 | 25 | -29.1 | rlcv-mir-rL1-9 | 3' arm | ||
28868 | + | 134008 | 89 | 25.5 | -27.4 | rlcv-mir-rL1-8 | 5' arm | ||
28867 | + | 133857 | 88 | 21 | -24.7 | rlcv-mir-rL1-7 | 5' arm | ||
28866 | + | 133683 | 81 | 26 | -23.3 | rlcv-mir-rL1-6 | 5' arm 3' arm | ||
28865 | + | 133546 | 87 | 25 | -25 | rlcv-mir-rL1-5 | 5' arm 3' arm | ||
28864 | + | 133280 | 79 | 19.5 | -23.8 | rlcv-mir-rL1-4 | 3' arm | ||
28863 | + | 133104 | 90 | 28.5 | -32.2 | rlcv-mir-rL1-3 | 3' arm | ||
28762 | + | 36661 | 81 | 26 | -23.1 | rlcv-mir-rL1-2 | 3' arm | ||
28891 | + | 143266 | 84 | 24.5 | -27.4 | rlcv-mir-rL1-15 | 3' arm | ||
28889 | + | 142826 | 86 | 24 | -25.2 | rlcv-mir-rL1-14 | 5' arm 3' arm | ||
28885 | + | 141820 | 84 | 27 | -34.4 | rlcv-mir-rL1-13 | 3' arm | ||
28884 | + | 141542 | 89 | 28.5 | -27.9 | rlcv-mir-rL1-12 | 5' arm 3' arm | ||
28881 | + | 141098 | 84 | 23 | -23.2 | rlcv-mir-rL1-10 | 3' arm | ||
28761 | + | 35308 | 87 | 26.5 | -29.6 | rlcv-mir-rL1-1 | 5' arm | ||
28890 | + | 143018 | 86 | 24 | -25.2 | #rlcv-mir-rL1-14 | 5' arm 3' arm | ||
28735 | + | 7964 | 86 | 21 | -21 | 5' arm 3' arm | |||
28737 | + | 8294 | 90 | 19.5 | -20.2 | 5' arm 3' arm | |||
28738 | + | 9290 | 89 | 23 | -32.2 | 5' arm 3' arm | |||
28734 | + | 7603 | 90 | 24 | -26.8 | 5' arm 3' arm | |||
28726 | + | 2253 | 87 | 19 | -21.11 | YP_067940 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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