miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
3530	-	112043	82	20.5	-20.2	NP_054162		5' arm      3' arm
3529	-	110085	87	24	-27.3	NP_054159		5' arm      3' arm
3528	-	99457	86	20.5	-21.2	NP_054145		5' arm      3' arm
3527	-	87446	90	20	-21.6	NP_054131		5' arm      3' arm
3526	-	80374	87	19	-24.8	NP_054124		5' arm      3' arm
3525	-	80112	84	22	-27.5	NP_054124		5' arm      3' arm
3524	-	69934	88	22	-25.4	NP_054113		5' arm      3' arm
3523	-	65810	83	19.5	-21.1	NP_054110		5' arm      3' arm
3522	-	46229	89	24.5	-22.3	NP_054084		5' arm      3' arm
3521	-	40630	84	20.5	-26.6	NP_054079		5' arm      3' arm
3520	-	36931	90	27	-22.4	NP_054075		5' arm      3' arm
3519	-	34221	89	20.5	-25.1	NP_054071		5' arm      3' arm
3518	-	30318	89	19	-27.1	NP_054066		5' arm      3' arm
3517	+	131996	88	20.5	-30.6	NP_054182		5' arm      3' arm
3516	+	122740	89	20	-22.9	NP_054170		5' arm      3' arm
3515	+	122329	89	21.5	-20.4	NP_054169		5' arm      3' arm
3514	+	120255	89	23.5	-20.6	NP_054168		5' arm      3' arm
3513	+	115008	87	20	-25.4	NP_054164		5' arm      3' arm
3512	+	108540	87	20	-24.2	NP_054158		5' arm      3' arm
3511	+	101544	89	21	-19.6	NP_054149		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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