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| GenBank Identifier | RefSeq Acc. | Name |
| 9627742 | NC_001623.1 | Autographa californica nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 3517 | + | 131996 | 88 | 20.5 | -30.6 | NP_054182 | 5' arm 3' arm | ||
| 3525 | - | 80112 | 84 | 22 | -27.5 | NP_054124 | 5' arm 3' arm | ||
| 3529 | - | 110085 | 87 | 24 | -27.3 | NP_054159 | 5' arm 3' arm | ||
| 3518 | - | 30318 | 89 | 19 | -27.1 | NP_054066 | 5' arm 3' arm | ||
| 3521 | - | 40630 | 84 | 20.5 | -26.6 | NP_054079 | 5' arm 3' arm | ||
| 3524 | - | 69934 | 88 | 22 | -25.4 | NP_054113 | 5' arm 3' arm | ||
| 3513 | + | 115008 | 87 | 20 | -25.4 | NP_054164 | 5' arm 3' arm | ||
| 3519 | - | 34221 | 89 | 20.5 | -25.1 | NP_054071 | 5' arm 3' arm | ||
| 3526 | - | 80374 | 87 | 19 | -24.8 | NP_054124 | 5' arm 3' arm | ||
| 3502 | + | 16411 | 80 | 22 | -24.6 | NP_054050 | 5' arm 3' arm | ||
| 3512 | + | 108540 | 87 | 20 | -24.2 | NP_054158 | 5' arm 3' arm | ||
| 3506 | + | 87735 | 90 | 19.5 | -23.9 | NP_054131 | 5' arm 3' arm | ||
| 3507 | + | 88272 | 90 | 23 | -23.5 | NP_054132 | 5' arm 3' arm | ||
| 3516 | + | 122740 | 89 | 20 | -22.9 | NP_054170 | 5' arm 3' arm | ||
| 3520 | - | 36931 | 90 | 27 | -22.4 | NP_054075 | 5' arm 3' arm | ||
| 3510 | + | 101300 | 85 | 19.5 | -22.3 | NP_054149 | 5' arm 3' arm | ||
| 3522 | - | 46229 | 89 | 24.5 | -22.3 | NP_054084 | 5' arm 3' arm | ||
| 3509 | + | 95577 | 89 | 19 | -21.6 | NP_054139 | 5' arm 3' arm | ||
| 3527 | - | 87446 | 90 | 20 | -21.6 | NP_054131 | 5' arm 3' arm | ||
| 3501 | + | 5822 | 90 | 24 | -21.3 | NP_054038 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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