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GenBank Identifier | RefSeq Acc. | Name |
15617474 | NC_003102.1 | Spodoptera litura nucleopolyhedrovirus |
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ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF![]() |
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
11650 | + | 3434 | 90 | 24.5 | -30.8 | 5' arm 3' arm | |||
11699 | - | 89603 | 87 | 26 | -23.2 | 5' arm 3' arm | |||
11682 | + | 132432 | 89 | 27 | -28.1 | 5' arm 3' arm | |||
11701 | - | 103654 | 90 | 28.5 | -24.9 | 5' arm 3' arm | |||
11673 | + | 89517 | 87 | 25.5 | -20 | 5' arm 3' arm | |||
11692 | - | 42747 | 90 | 33 | -25.1 | 5' arm 3' arm | |||
11684 | - | 3522 | 89 | 25 | -25.8 | 5' arm 3' arm | |||
11672 | + | 76509 | 90 | 23.5 | -31.5 | 5' arm 3' arm | |||
11654 | + | 25814 | 87 | 25 | -33.5 | 5' arm 3' arm | |||
11656 | + | 26329 | 86 | 19 | -22.3 | 5' arm 3' arm | |||
11655 | + | 25923 | 90 | 25 | -24.2 | 5' arm 3' arm | |||
11651 | + | 10563 | 85 | 21 | -26.5 | 5' arm 3' arm | |||
11686 | - | 15816 | 86 | 21.5 | -21.3 | NP_258284 | 5' arm 3' arm | ||
11685 | - | 15060 | 89 | 23 | -22 | NP_258284 | 5' arm 3' arm | ||
11687 | - | 16829 | 87 | 20.5 | -28.9 | NP_258285 | 5' arm 3' arm | ||
11652 | + | 17296 | 86 | 20.5 | -25.51 | NP_258285 | 5' arm 3' arm | ||
11653 | + | 19933 | 84 | 19 | -21.6 | NP_258289 | 5' arm 3' arm | ||
11688 | - | 23238 | 88 | 22.5 | -24.3 | NP_258291 | 5' arm 3' arm | ||
11657 | + | 26559 | 89 | 20.5 | -28.8 | NP_258293 | 5' arm 3' arm | ||
11689 | - | 29566 | 89 | 20.5 | -20.7 | NP_258297 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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