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GenBank Identifier | RefSeq Acc. | Name |
15617474 | NC_003102.1 | Spodoptera litura nucleopolyhedrovirus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
11687 | - | 16829 | 87 | 20.5 | -28.9 | NP_258285 | 5' arm 3' arm | ||
11697 | - | 86048 | 89 | 20.5 | -21.3 | NP_258355 | 5' arm 3' arm | ||
11662 | + | 41996 | 87 | 20.5 | -23.6 | NP_258310 | 5' arm 3' arm | ||
11663 | + | 42117 | 88 | 20.5 | -21.7 | NP_258310 | 5' arm 3' arm | ||
11681 | + | 131962 | 90 | 20.5 | -22.5 | NP_258403 | 5' arm 3' arm | ||
11675 | + | 99432 | 85 | 20.5 | -22 | NP_258369 | 5' arm 3' arm | ||
11671 | + | 74081 | 87 | 20 | -19.6 | NP_258347 | 5' arm 3' arm | ||
11694 | - | 70724 | 90 | 19.5 | -24.2 | NP_258342 | 5' arm 3' arm | ||
11664 | + | 46070 | 90 | 19.5 | -27.2 | NP_258314 | 5' arm 3' arm | ||
11658 | + | 31682 | 83 | 19.5 | -21.5 | NP_258300 | 5' arm 3' arm | ||
11698 | - | 88008 | 86 | 19 | -23.4 | NP_258358 | 5' arm 3' arm | ||
11656 | + | 26329 | 86 | 19 | -22.3 | 5' arm 3' arm | |||
11665 | + | 50652 | 89 | 19 | -25.2 | NP_258323 | 5' arm 3' arm | ||
11703 | - | 120933 | 85 | 19 | -21.2 | NP_258392 | 5' arm 3' arm | ||
11653 | + | 19933 | 84 | 19 | -21.6 | NP_258289 | 5' arm 3' arm | ||
11680 | + | 115060 | 89 | 19 | -29.7 | NP_258386 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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