miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628918 NC_001729.1 Adeno-associated virus 3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
4415 - 3369 90 22.5 -19.5 NP_043941 5' arm      3' arm
4413 + 2594 80 20 -22.42 5' arm      3' arm
4412 + 1235 90 21 -23.1 NP_043940 5' arm      3' arm
4414 - 812 89 21.5 -24.8 NP_043940 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.