miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
22960704 NC_004183.1 Colorado tick fever virus segment 3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
16833 + 1982 88 22 -20.7 NP_690893 5' arm      3' arm
16834 - 1360 87 22 -22.8 NP_690897 5' arm      3' arm
16835 + 543 87 19.5 -26.1 NP_690898 5' arm      3' arm
16836 - 744 88 21.5 -22 NP_690898 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.