miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
125	-	11245	89	22.5	-19.4	AP_000145		5' arm      3' arm
152	-	33323	85	19.5	-20.1	AP_000159		5' arm      3' arm
96	+	8850	89	20	-20.1	AP_000144		5' arm      3' arm
120	-	7927	90	20	-21	AP_000143		5' arm      3' arm
131	-	14968	87	22	-21	AP_000147		5' arm      3' arm
99	+	11922	85	20.5	-21.06	AP_000146		5' arm      3' arm
87	+	4024	86	22	-21.3			5' arm      3' arm
115	+	31054	81	20	-21.4	AP_000157		5' arm      3' arm
90	+	4646	82	20.5	-21.6			5' arm      3' arm
95	+	8228	89	23	-21.6	AP_000143		5' arm      3' arm
128	-	12261	90	22.5	-21.6	AP_000146		5' arm      3' arm
140	-	20179	89	20.5	-21.84			5' arm      3' arm
89	+	4513	86	19	-21.9			5' arm      3' arm
124	-	11009	90	21	-22	AP_000145		5' arm      3' arm
116	-	1302	87	23.5	-22.1			5' arm      3' arm
111	+	23390	90	21	-22.2			5' arm      3' arm
85	+	1917	89	21.5	-22.2	AP_000142		5' arm      3' arm
103	+	16010	90	19.5	-22.3			5' arm      3' arm
136	-	16819	89	20.5	-22.4	AP_000148		5' arm      3' arm
88	+	4321	88	23.5	-22.5			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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