miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
91	+	5074	90	22	-23.2	AP_000143		5' arm      3' arm
96	+	8850	89	20	-20.1	AP_000144		5' arm      3' arm
98	+	10920	90	21	-27.3	AP_000145		5' arm      3' arm
123	-	10866	88	21	-25	AP_000145		5' arm      3' arm
124	-	11009	90	21	-22	AP_000145		5' arm      3' arm
122	-	10740	90	26.5	-32.6	AP_000145		5' arm      3' arm
125	-	11245	89	22.5	-19.4	AP_000145		5' arm      3' arm
129	-	12526	88	20	-25.3	AP_000146		5' arm      3' arm
128	-	12261	90	22.5	-21.6	AP_000146		5' arm      3' arm
126	-	11877	90	21	-27.9	AP_000146		5' arm      3' arm
127	-	11994	88	20	-24.7	AP_000146		5' arm      3' arm
130	-	12976	90	21.5	-23.2	AP_000146		5' arm      3' arm
99	+	11922	85	20.5	-21.06	AP_000146		5' arm      3' arm
100	+	13090	89	24	-25.2	AP_000146		5' arm      3' arm
131	-	14968	87	22	-21	AP_000147		5' arm      3' arm
102	+	14209	89	19.5	-23.4	AP_000147		5' arm      3' arm
101	+	13545	88	19.5	-24.6	AP_000147		5' arm      3' arm
136	-	16819	89	20.5	-22.4	AP_000148		5' arm      3' arm
137	-	17595	81	21	-23.1	AP_000149		5' arm      3' arm
138	-	17698	88	21.5	-29.7	AP_000149		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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