miRNA display CGI


Results 1 - 15 of 15 are showing below:
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GenBank Identifier RefSeq Acc. Name
58177829 NC_003785.2 Satsuma dwarf virus RNA 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
15159 + 973 87 22 -33.2 NP_620566 5' arm      3' arm
15167 + 874 90 19.5 -24.4 NP_620567 5' arm      3' arm
15168 + 1367 89 20 -21.04 5' arm      3' arm
15166 + 362 79 20.5 -24.9 NP_620567 5' arm      3' arm
15170 + 4410 88 21.5 -22.3 NP_620567 5' arm      3' arm
15169 + 1565 90 23.5 -24 NP_620567 5' arm      3' arm
15160 + 1239 90 19 -20.54 NP_620566 5' arm      3' arm
15162 + 3080 90 20 -22.27 NP_620566 5' arm      3' arm
15158 + 880 87 20 -25.7 NP_620566 5' arm      3' arm
15163 + 4385 86 20.5 -25.4 NP_620566 5' arm      3' arm
15161 + 2423 90 21.5 -22.4 NP_620566 5' arm      3' arm
15165 - 670 90 20 -25.5 NP_620566 5' arm      3' arm
15164 - 410 90 19.5 -22.2 NP_620566 5' arm      3' arm
15171 - 671 90 20 -25.5 NP_620567 5' arm      3' arm
15172 - 809 84 19.5 -25.6 NP_620567 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.