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GenBank Identifier | RefSeq Acc. | Name |
9628907 | NC_001726.1 | Carrot mottle mimic virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
4403 | + | 365 | 87 | 22 | -22.9 | NP_054007 | 5' arm 3' arm | ||
4404 | + | 900 | 89 | 22 | -23 | NP_054006 | 5' arm 3' arm | ||
4405 | + | 2207 | 86 | 23 | -20.3 | NP_054006 | 5' arm 3' arm | ||
4406 | + | 2421 | 90 | 20.5 | -20.3 | NP_054006 | 5' arm 3' arm | ||
4407 | + | 3169 | 89 | 24.5 | -24.2 | NP_054009 | 5' arm 3' arm | ||
4408 | - | 129 | 88 | 21.5 | -19.7 | NP_054007 | 5' arm 3' arm | ||
4409 | - | 673 | 89 | 19 | -19.6 | NP_054007 | 5' arm 3' arm | ||
4410 | - | 988 | 90 | 23 | -26.7 | NP_054006 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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