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GenBank Identifier | RefSeq Acc. | Name |
20153383 | NC_003603.1 | Groundnut rosette virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
14805 | + | 2440 | 87 | 20.5 | -21 | NP_619714 | 5' arm 3' arm | ||
14806 | + | 2723 | 86 | 20.5 | -22.3 | NP_619660 | 5' arm 3' arm | ||
14807 | + | 3510 | 89 | 21.5 | -19.9 | 5' arm 3' arm | |||
14808 | + | 3810 | 90 | 21.5 | -19.6 | 5' arm 3' arm | |||
14809 | - | 332 | 90 | 21.5 | -25 | NP_619659 | 5' arm 3' arm | ||
14810 | - | 1897 | 89 | 20 | -25.2 | NP_619714 | 5' arm 3' arm | ||
14811 | - | 2574 | 87 | 22 | -31 | 5' arm 3' arm | |||
14812 | - | 2921 | 82 | 21 | -23.4 | NP_619660 | 5' arm 3' arm | ||
14813 | - | 3020 | 90 | 19 | -20.7 | NP_619661 | 5' arm 3' arm | ||
14814 | - | 3279 | 84 | 19.5 | -24.1 | NP_619661 | 5' arm 3' arm | ||
14815 | - | 3471 | 89 | 20 | -20 | NP_619661 | 5' arm 3' arm | ||
14816 | - | 3934 | 90 | 21 | -21.7 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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