miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
11450	+	19190	89	19	-19.4	NP_203458		5' arm      3' arm
11514	-	1433	90	19	-19.4	NP_203416		5' arm      3' arm
11556	-	19880	88	21.5	-19.4	NP_203458		5' arm      3' arm
11595	-	36811	90	19.5	-19.5			5' arm      3' arm
11590	-	33754	88	21	-19.5	NP_203472		5' arm      3' arm
11507	+	46483	90	22	-19.6	NP_203494		5' arm      3' arm
11576	-	28212	89	20.5	-19.8	NP_203466		5' arm      3' arm
11601	-	38970	80	23.5	-19.8	NP_203481		5' arm      3' arm
11473	+	29699	86	19	-19.8	NP_203468		5' arm      3' arm
11481	+	33588	83	19	-19.8	NP_203472		5' arm      3' arm
11540	-	14151	88	22	-19.9	NP_203442		5' arm      3' arm
11498	+	40059	90	20	-19.9	NP_203483		5' arm      3' arm
11584	-	31642	75	20	-19.9	NP_203471		5' arm      3' arm
11416	+	4533	89	19.5	-20			5' arm      3' arm
11448	+	18812	89	20	-20.1	NP_203457		5' arm      3' arm
11608	-	41262	90	19.5	-20.2	NP_203486		5' arm      3' arm
11433	+	12360	88	20	-20.2	NP_203437		5' arm      3' arm
11513	-	1285	89	19.5	-20.2	NP_203416		5' arm      3' arm
11579	-	29373	88	23	-20.3	NP_203468		5' arm      3' arm
11593	-	35252	90	20.5	-20.4			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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