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GenBank Identifier | RefSeq Acc. | Name |
51010904 | NC_003094.2 | Helicoverpa armigera nuclear polyhedrosis virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
11640 | + | 50939 | 89 | 20 | -27.6 | NP_203615 | 5' arm 3' arm | ||
11641 | + | 58467 | 89 | 28.5 | -24.9 | NP_203621 | 5' arm 3' arm | ||
11642 | + | 73000 | 90 | 21 | -23.4 | NP_203635 | 5' arm 3' arm | ||
11643 | + | 99602 | 88 | 20 | -22.7 | 5' arm 3' arm | |||
11644 | - | 36065 | 86 | 24.5 | -20.8 | NP_203597 | 5' arm 3' arm | ||
11645 | - | 81667 | 89 | 21 | -20.6 | NP_203643 | 5' arm 3' arm | ||
11646 | - | 81829 | 89 | 21 | -31.8 | NP_203643 | 5' arm 3' arm | ||
11647 | - | 100747 | 87 | 19 | -24.4 | NP_203662 | 5' arm 3' arm | ||
11648 | - | 113695 | 88 | 21.5 | -23 | NP_203677 | 5' arm 3' arm | ||
11649 | - | 120564 | 89 | 25 | -24.1 | NP_203685 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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