miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9628705 NC_001710.1 GB virus C/Hepatitis G virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
4253 + 670 90 22.5 -22.9 NP_043570 5' arm      3' arm
4254 + 794 90 23 -30.8 NP_043570 5' arm      3' arm
4255 + 1483 89 22.5 -20.8 NP_043570 5' arm      3' arm
4256 + 1635 82 23.5 -29.8 NP_043570 5' arm      3' arm
4257 + 2009 90 23.5 -22.7 5' arm      3' arm
4258 + 2515 89 25 -26.5 NP_043570 5' arm      3' arm
4259 + 2957 89 28 -24.8 NP_043570 5' arm      3' arm
4260 + 3104 89 26.5 -26.3 NP_043570 5' arm      3' arm
4261 + 3215 90 20.5 -23.1 NP_043570 5' arm      3' arm
4262 + 3322 88 21.5 -25.5 NP_043570 5' arm      3' arm
4263 + 3807 89 21 -23.6 NP_043570 5' arm      3' arm
4264 + 4138 90 20 -32.2 NP_043570 5' arm      3' arm
4265 + 4621 87 24 -34.8 NP_043570 5' arm      3' arm
4266 + 4800 80 19.5 -26 NP_043570 5' arm      3' arm
4267 + 5087 89 22 -36 NP_043570 5' arm      3' arm
4268 + 5233 89 20 -31 NP_043570 5' arm      3' arm
4269 + 5754 89 19.5 -22.3 NP_043570 5' arm      3' arm
4270 + 6064 89 19.5 -31.1 NP_043570 5' arm      3' arm
4271 + 6429 84 21 -30.2 NP_043570 5' arm      3' arm
4272 + 6908 87 21.5 -21.1 NP_043570 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.