miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
13568	+	34017	79	23.5	-33.2			5' arm      3' arm
13586	-	34168	88	19.5	-23			5' arm      3' arm
13560	+	24665	89	24.5	-25			5' arm      3' arm
13584	-	24866	87	19	-20.9			5' arm      3' arm
13564	+	28738	90	20.5	-22.2			5' arm      3' arm
13571	-	502	89	20.5	-22	NP_599033		5' arm      3' arm
13539	+	765	90	19.5	-22.9	NP_599034		5' arm      3' arm
13542	+	1582	87	21.5	-21	NP_599034		5' arm      3' arm
13541	+	1134	90	21.5	-20.2	NP_599034		5' arm      3' arm
13540	+	961	89	21.5	-23.24	NP_599034		5' arm      3' arm
13572	-	1223	90	23	-22.5	NP_599034		5' arm      3' arm
13543	+	3404	90	19.5	-21.7	NP_599035		5' arm      3' arm
13573	-	3194	90	19	-22	NP_599035		5' arm      3' arm
13544	+	4771	88	22	-25.7	NP_599037		5' arm      3' arm
13545	+	6330	90	20.5	-25.7	NP_599040		5' arm      3' arm
13546	+	7126	86	20	-21.4	NP_599041		5' arm      3' arm
13575	-	8604	85	20.5	-21.7	NP_599043		5' arm      3' arm
13576	-	8822	87	20.5	-20.6	NP_599043		5' arm      3' arm
13574	-	8483	89	21	-26.3	NP_599043		5' arm      3' arm
13549	+	7993	89	19	-21.9	NP_599043		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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