miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
19548987 NC_003444.1 Shigella flexneri bacteriophage V

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13568 + 34017 79 23.5 -33.2 5' arm      3' arm
13565 + 31854 90 23 -32.7 NP_599077 5' arm      3' arm
13550 + 8518 90 22 -31.3 NP_599043 5' arm      3' arm
13562 + 27567 89 21 -28.2 NP_599069 5' arm      3' arm
13578 - 9993 89 21 -27.2 NP_599046 5' arm      3' arm
13580 - 12612 87 20.5 -26.3 NP_599047 5' arm      3' arm
13574 - 8483 89 21 -26.3 NP_599043 5' arm      3' arm
13556 + 15775 90 19.5 -26 NP_599051 5' arm      3' arm
13587 - 36755 88 25 -25.8 NP_599085 5' arm      3' arm
13561 + 27143 87 19 -25.7 NP_599068 5' arm      3' arm
13544 + 4771 88 22 -25.7 NP_599037 5' arm      3' arm
13545 + 6330 90 20.5 -25.7 NP_599040 5' arm      3' arm
13548 + 7658 87 21 -25.7 NP_599043 5' arm      3' arm
13566 + 31968 89 21.5 -25.1 NP_599077 5' arm      3' arm
13569 + 36153 85 19.5 -25 NP_599083 5' arm      3' arm
13560 + 24665 89 24.5 -25 5' arm      3' arm
13582 - 14181 87 19 -24.6 NP_599049 5' arm      3' arm
13577 - 9471 90 19 -23.6 NP_599045 5' arm      3' arm
13540 + 961 89 21.5 -23.24 NP_599034 5' arm      3' arm
13583 - 14721 89 19 -23.2 NP_599050 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.