miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29366687 NC_004667.1 Grapevine leafroll-associated virus 3

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
18040 - 13507 90 19.5 -20 NP_813801 5' arm      3' arm
18039 + 9326 89 23.5 -19.7 5' arm      3' arm
18038 + 9018 87 19.5 -22.6 5' arm      3' arm
18037 + 4169 85 20 -23 5' arm      3' arm
18036 + 718 87 23 -19.5 NP_813795 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.