miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629255 NC_001793.1 Oat blue dwarf virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5092 - 2452 89 19 -21.1 NP_044447 5' arm      3' arm
5093 - 2884 88 21 -19.8 NP_044447 5' arm      3' arm
5094 - 3062 89 20.5 -28.6 NP_044447 5' arm      3' arm
5095 - 5090 90 20 -22.8 NP_044447 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.