miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629914 NC_001870.1 Simian-Human immunodeficiency virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
6706 + 1828 81 25 -28.7 NP_046122 5' arm      3' arm
6704 + 37 90 22.5 -22.6 5' arm      3' arm
6705 + 241 72 19.5 -34.9 5' arm      3' arm
6707 + 8928 88 21.5 -20.1 NP_046131 5' arm      3' arm
6708 + 9860 90 22.5 -22.6 5' arm      3' arm
6709 - 1931 88 19 -20.4 NP_046123 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.