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GenBank Identifier | RefSeq Acc. | Name |
56692441 | NC_006551.1 | Usutu virus |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
30673 | + | 968 | 87 | 21 | -31.8 | YP_164264 | 5' arm 3' arm | ||
30674 | + | 1731 | 88 | 21 | -21.5 | YP_164264 | 5' arm 3' arm | ||
30675 | + | 2023 | 89 | 20.5 | -20.1 | YP_164264 | 5' arm 3' arm | ||
30676 | + | 9071 | 90 | 21 | -21.2 | YP_164264 | 5' arm 3' arm | ||
30677 | + | 9864 | 85 | 20.5 | -27.8 | YP_164264 | 5' arm 3' arm | ||
30678 | + | 10983 | 84 | 21.5 | -22.5 | 5' arm 3' arm | |||
30679 | - | 5257 | 89 | 21.5 | -20.7 | YP_164264 | 5' arm 3' arm | ||
30680 | - | 10708 | 88 | 24 | -23.94 | 5' arm 3' arm | |||
30681 | - | 10808 | 90 | 23.5 | -22.2 | 5' arm 3' arm | |||
30682 | - | 11066 | 84 | 21.5 | -23.5 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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