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GenBank Identifier | RefSeq Acc. | Name |
19919937 | NC_003502.1 | Blackcurrant reversion virus RNA 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
13907 | + | 974 | 89 | 21.5 | -28.9 | NP_612586 | 5' arm 3' arm | ||
13908 | + | 1072 | 90 | 21 | -23.9 | NP_612586 | 5' arm 3' arm | ||
13909 | + | 1822 | 89 | 21 | -22.7 | NP_612586 | 5' arm 3' arm | ||
13910 | + | 2634 | 84 | 19 | -20.5 | NP_612586 | 5' arm 3' arm | ||
13911 | + | 3281 | 90 | 20.5 | -20.6 | NP_612586 | 5' arm 3' arm | ||
13912 | + | 3882 | 82 | 20.5 | -23.1 | NP_612586 | 5' arm 3' arm | ||
13913 | - | 929 | 88 | 19.5 | -25 | NP_612586 | 5' arm 3' arm | ||
13914 | - | 1065 | 90 | 20 | -24.9 | NP_612586 | 5' arm 3' arm | ||
13922 | + | 528 | 88 | 19 | -29.5 | NP_612604 | 5' arm 3' arm | ||
13923 | + | 4230 | 88 | 25 | -27.1 | NP_612604 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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