miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29502191 NC_002076.2 TT virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8394 + 3573 90 22.5 -32.1 5' arm      3' arm
8392 + 91 90 20 -19.6 5' arm      3' arm
8393 + 3474 80 20 -26.1 5' arm      3' arm
8398 - 3662 90 27 -28.3 5' arm      3' arm
8395 - 2728 87 22.5 -27.2 NP_817122 5' arm      3' arm
8397 - 3557 90 22 -22.02 5' arm      3' arm
8396 - 3199 84 19 -24.2 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.